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teaching:2019winter:applcompgenomics [2019/09/17 07:12] rwittler [Table] |
teaching:2019winter:applcompgenomics [2020/09/14 08:26] (current) rwittler |
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| Cedric Chauve -- guest lecturer (Internationales Gastdozentenprogramm)\\ | Cedric Chauve -- guest lecturer (Internationales Gastdozentenprogramm)\\ | ||
| - | //Department of Mathematics,//\\ | + | //Department of Mathematics,// |
| - | //Simon Fraser University, Burnaby, BC, Canada// | + | //Simon Fraser University, Burnaby, BC, Canada//\\ |
| + | cedric.chauve@sfu.ca | ||
| === Block seminar === | === Block seminar === | ||
| Line 10: | Line 11: | ||
| * 10.–14.02.2020 | * 10.–14.02.2020 | ||
| - | ===== Schedule (draft) ===== | + | ===== Course Materials ====== |
| - | ^ First block |||| | + | ... can be found in [[https://github.com/cchauve/Bielefeld-block-seminar-on-Applied-Comparative-Genomics|this github repository]]. |
| - | | Mon | 16.09. | 10-12h | Overview: The genomes of 16 Anopheles mosquitoes | | + | |
| - | | Tue | 17.09. | 10-12h | | | + | |
| - | | Wed | 18.09. | 10-12h | | | + | |
| - | | Thu | 19.09. | 10-12h | | | + | |
| - | | Fri | 20.09. | 10-12h | | | + | |
| - | | |||| | + | |
| - | | Mon | 23.09. | 10-12h | | | + | |
| - | | Tue | 24.09. | 10-12h | | | + | |
| - | | Wed | 25.09. | 10-12h | | | + | |
| - | | Thu | 26.09. | 10-12 and 13-15h | | | + | |
| - | | Fri | 27.09. | --- | | | + | |
| - | ^ Second block ^^^^ | + | ===== Schedule ===== |
| - | |Mon| 10.02.| 10-12h | | | + | |
| - | |Tue| 11.02.| 10-12h | | | + | ^ First block (16.–27.09.2019) |||| |
| - | |Wed| 12.02.| 10-12h | | | + | | Mon | 16.09. | 10-12h | Overview: The genomes of 16 Anopheles mosquitoes | |
| - | |Thu| 13.02.| 10-12 and 13-15h | | | + | | Tue | 17.09. | 10-12h | Data quality | |
| - | |Fri| 14.02.| --- | | | + | | Wed | 18.09. | 10-12h | The //gambiae// phylogeny | |
| + | | Thu | 19.09. | 10-12h | Use synteny for gene family analysis | | ||
| + | | Fri | 20.09. | 10-12h | Open reading | | ||
| + | | |||| | ||
| + | | Mon | 23.09. | 10-12h | Open reading | | ||
| + | | Tue | 24.09. | 10-12h | Gene-tree species-tree reconciliation | | ||
| + | | Wed | 25.09. | 10-12h | Fabian: Synteny blocks | | ||
| + | | Thu | 26.09. | 10-12h | Jan: Improving Scaffolding | | ||
| + | | ||| Andreas: OrthoDB (BUSCO) | | ||
| + | | . || 13-15h | Feedback | | ||
| + | | Fri | 27.09. | --- | | | ||
| + | |||
| + | ^ Second block (10.–14.02.2020) |||| | ||
| + | | Mon | 10.02. | 10-12h | The genome rearrangement landscape | | ||
| + | | Tue | 11.02. | 10-12h | Handling duplications / Small parsimony problem (SPP) | | ||
| + | | Wed | 12.02. | 10-12h | Ancestral gene orders in a model-free framework | | ||
| + | | Thu | 13.02. | 10-12h | Joint scaffolding and ancestral gene order reconstruction | | ||
| + | | Fri | 14.02. | 10-12h | Student talks | | ||
teaching/2019winter/applcompgenomics.1568704323.txt.gz · Last modified: 2019/09/17 07:12 by rwittler